Please use this identifier to cite or link to this item: https://hdl.handle.net/20.500.11851/3260
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dc.contributor.authorAtahan Evrenk, Sule-
dc.contributor.authorAtalay, Fatma Betül-
dc.date.accessioned2019-12-30T07:28:21Z
dc.date.available2019-12-30T07:28:21Z
dc.date.issued2019
dc.identifier.citationAtahan-Evrenk, S., & Atalay, F. B. (2019). Prediction of Intramolecular Reorganization Energy Using Machine Learning. The Journal of Physical Chemistry Aen_US
dc.identifier.issn1089-5639
dc.identifier.other9
dc.identifier.urihttps://pubs.acs.org/doi/10.1021/acs.jpca.9b02733-
dc.identifier.urihttps://hdl.handle.net/20.500.11851/3260-
dc.description.abstractFacile charge transport is desired for many applications of organic semiconductors (OSCs). To take advantage of high-throughput screening methodologies for the discovery of novel OSCs, parameters relevant to charge transport are of high interest. The intramolecular reorganization energy (RE) is one of the important charge transport parameters suitable for molecular-level screening. Because the calculation of the RE with quantum-chemical methods is expensive for large-scale screening, we investigated the possibility of predicting the RE from the molecular structure by means of machine learning methods. We combinatorially generated a molecular library of 5631 molecules with extended conjugated backbones using benzene, thiophene, furan, pyrrole, pyridine, pyridazine, and cyclopentadiene as building blocks and obtained the target electronic data at the B3LYP level of theory with the 6-31G* basis set. We compared ridge, kernel ridge, and deep neural net (DNN) regression models based on graph- and geometry-based descriptors. We found that DNNs outperform the other methods and can predict the RE with a coefficient of determination of 0.92 and root-mean-square error of similar to 12 meV. This study shows that the REs of organic semiconductor molecules can be predicted from the molecular structures with high accuracy.en_US
dc.description.sponsorshipWe thank Secil Usta and Simla B. Harma for help with DNN scripting and Isiksu Eksioglu for useful discussions regarding the use of the Keras python deep learning library. S.A.-E. acknowledges financial support from The Scientific and Technological Research Council of Turkey (Ardeb 3001 Programme, Grant 216Z096), software support from Chem Axon Ltd., and support from NVIDLA Corporation through the donation of the Titan Xp GPU used for this research.
dc.language.isoenen_US
dc.publisherAMER CHEMICAL SOCen_US
dc.relation.ispartofJOURNAL OF PHYSICAL CHEMISTRY Aen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectMolecular structureen_US
dc.subjectMolecular modelingen_US
dc.subjectMathematical methodsen_US
dc.titlePrediction of Intramolecular Reorganization Energy Using Machine Learningen_US
dc.typeArticleen_US
dc.departmentFaculties, School of Medicine, Department of Basic Medical Sciencesen_US
dc.departmentFakülteler, Tıp Fakültesi, Temel Tıp Bilimleri Bölümütr_TR
dc.identifier.volume123
dc.identifier.issue36
dc.identifier.startpage7855
dc.identifier.endpage7863
dc.authorid0000-0002-4905-3491-
dc.identifier.wosWOS:000486361100021en_US
dc.identifier.scopus2-s2.0-85072133045en_US
dc.institutionauthorAtahan Evrenk, Şule-
dc.institutionauthorAtalay, Fatma Betül-
dc.identifier.pmid31204476en_US
dc.identifier.doi10.1021/acs.jpca.9b02733-
dc.authorwosidD-4736-2012-
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.identifier.scopusqualityQ2-
item.cerifentitytypePublications-
item.languageiso639-1en-
item.openairecristypehttp://purl.org/coar/resource_type/c_18cf-
item.openairetypeArticle-
item.fulltextNo Fulltext-
item.grantfulltextnone-
Appears in Collections:PubMed İndeksli Yayınlar Koleksiyonu / PubMed Indexed Publications Collection
Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Temel Tıp Bilimleri Bölümü / Department of Basic Medical Sciences
WoS İndeksli Yayınlar Koleksiyonu / WoS Indexed Publications Collection
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