| Issue Date | Title | Author(s) |
| 2016 | Anti-cancer Drug Activity Prediction by Ensemble Learning | Tolan, Ertan; Tan, Mehmet |
| 2021 | Automated Molecule Generation using Deep Q-Learning and Graph Neural Networks | Isik R.; Tan, Mehmet |
| 2016 | Biological Network Derivation by Positive Unlabeled Learning Algorithms | Pancaroglu, Doruk; Tan, Mehmet |
| Sep-2020 | Chemical Induced Differential Gene Expression Prediction on LINCS Database | Işık, R.; Ekşioğlu, I.; Maral, B. C.; Bardak, B.; Tan, Mehmet |
| 2021 | A Convolutional Deep Clustering Framework for Gene Expression Time Series | Özgül, Ozan Frat; Bardak, Batuhan ; Tan, Mehmet |
| 2022 | Çizge sinir aglari ve derin takviyeli ögrenme kullanarak otomatik molekül üretimi | Işık, Rıza |
| 2021 | DeepGrep: A deep convolutional neural network for predicting gene-regulating effects of small molecules | Bardak B.; Tan, Mehmet |
| 2017 | Disease outbreak prediction by data integration and multi-task learning | Bardak, Batuhan ; Tan, Mehmet |
| Sep-2019 | Drug response prediction by ensemble learning and drug-induced gene expression signatures | Tan, Mehmet ; Özgül, Ozan Fırat; Bardak, Batuhan ; Ekşioğlu, Işıksu; Sabuncuoğlu, S. |
| 2014 | Drug sensitivity prediction for cancer cell lines based on pairwise kernels and miRNA profiles | Tan, Mehmet |
| 2017 | Edge distance graph kernel and its application to small molecule classification | Tan, Mehmet |
| 2012 | Effective Enrichment of Gene Expression Data Sets | Şirin, Utku; Erdoğdu, Utku; Tan, Mehmet ; Polat, Faruk; Alhajj, Reda |
| Jun-2016 | Effective gene expression data generation framework based on multi-model approach | Şirin, Utku; Erdoğdu, Utku; Polat, Faruk; Tan, Mehmet ; Alhajj, Reda |
| 2011 | Employing Machine Learning Techniques for Data Enrichment: Increasing the number of samples for effective gene expression data analysis | Erdoğdu, Utku; Tan, Mehmet ; Alhajj, Reda; Polat, Faruk; Demetrick, Douglas; Rokne, Jon |
| 2010 | Feature Selection for Graph Kernels | Tan, Mehmet ; Polat, Faruk; Alhajj, Reda |
| 2018 | A Fully Unsupervised Framework for Scoring Driving Style | Özgül, Ozan Fırat; Çakır, Mehmet Ulaş; Tan, Mehmet ; Amasyalı, Mehmet Fatih; Hayvacı, Harun Taha |
| 2016 | Hastalık salgınlarının internet erişim ve arama verisi kullanılarak tahmini | Bardak, Batuhan |
| 2017 | Hücre Hattı Duyarlılık İmzaları ve Toplu Yapay Öğrenme Metotları ile Anti-Kanser İlaç Aktivite Tahmini | Tan, Mehmet ; Sabuncuoğlu, Suna |
| 2021 | Improving clinical outcome predictions using convolution over medical entities with multimodal learning | Bardak, Batuhan ; Tan, Mehmet |
| 2014 | Improving Positive Unlabeled Learning Algorithms for Protein Interaction Prediction | Pancaroglu, Doruk; Tan, Mehmet |
| 2011 | Influence of Prior Knowledge in Constraint-Based Learning of Gene Regulatory Networks | Tan, Mehmet ; Alshalalfa, Mohammed; Alhajj, Reda; Polat, Faruk |
| 2013 | Integrating machine learning techniques into robust data enrichment approach and its application to gene expression data | Erdoğdu, Utku; Tan, Mehmet ; Alhajj, Reda; Polat, Faruk; Rokne, Jon; Demetrick, Douglas |
| 2021 | İlaç Kaynaklı Gen İfadesi Değişimlerinin Tahmini ve İlaç Tasarımında Kullanımı | Tan, Mehmet ; Özadali Sari, Keriman |
| 2015 | Kimyasal moleküllerin eşlenmesi için çizge temelli örüntü tanıma kullanımı | Gökçer, Yunus |
| 2022 | Kimyasalların gen düzenleyici etkilerinin tahmini için transfer öğrenimi | Maral, Bahattin Can |
| 2016 | Multi-Scale Modularity and Motif Distributional Effect in Metabolic Networks | Gao, Shang; Chen, Alan; Rahmani, Ali; Zeng, Jia; Tan, Mehmet ; Alhajj, Reda; Rokne, Jon; Demetrick, Douglas; Wei, Xiaohui |
| 5-Jul-2018 | Predicting drug activity by image encoded gene expression profiles | Özgül, Ozan Fırat; Bardak, Batuhan ; Tan, Mehmet |
| Oct-2016 | Prediction of anti-cancer drug response by kernelized multi-task learning | Tan, Mehmet |
| 28-Dec-2015 | Prediction of influenza outbreaks by integrating Wikipedia article access logs and Google flu trend data | Bardak, Batuhan ; Tan, Mehmet |
| 2014 | Protein etkileşim tahmini için pozitif etiketsiz öğrenme algoritmalarının geliştirilmesi | Pancaroğlu, Doruk |
| 2012 | Protein etkileşimlerinin tahmininde pozitif etiketlenmemiş öğrenme | Kılıç, Cumhur |
| 2012 | Revealing miRNA Regulation and miRNA Target Prediction Using Constraint-Based Learning | Alshalalfa, Mohammed; Tan, Mehmet ; Naji, Ghada; Alhajj, Reda; Polat, Faruk; Rokne, Jon |
| 2013 | Subtree selection in kernels for graph classification | Tan, Mehmet ; Polat, Faruk; Alhajj, Reda |
| 2020 | Toplu öğrenme ile ilaç kombinasyonlarının sinerji skor tahmini | Ekşioğlu, Işıksu |
| 2016 | Topluluk yöntemi ve ilaç imzaları kullanılarak anti kanser ilaçların aktivite tahmini | Tolan, Ertan |
| 2022 | Transfer Learning for Predicting Gene Regulatory Effects of Chemicals | Maral, Bahattin Can; Tan, Mehmet |
| 2021 | Using clinical drug representations for improving mortality and length of stay predictions | Bardak B.; Tan, Mehmet |
| 2022 | Yogun bakim hastalarinin mortalite ve hastanede kalma sürelerinin derin ögrenme yöntemleri ile tahmini | Bardak, Batuhan |
